We applied this conditional clustering algorithm to the gene expression data from Diehn et al 2002.
The experiment used cDNA microarrays to study the genomic expressions of human T cells in experimental control condition, and in response to stimulations of CD3, CD28, their
costimulation CD3CD28, lectin phytohemagglutinin (PHA) and a combination of the calcium ionophore ionomycin and the phorbol ester phorbol 12-myristate 13-acetate (PMA/lo).We performed Gene Ontology analysis for the resulting clusters, using the software EASE (Expression Analysis Systematic Explorer). EASE can be downloaded at http://david.abcc.ncifcrf.gov/ease/ease.jsp
Below are the supplementary tables and figures.