+
REAGENTS
 
Target genes of NF-kB


  • Cytokines/Chemokines and their modulators
  • Immunoreceptors
  • Proteins involved in antigen presentation
  • Cell adhesion molecules
  • Acute phase proteins
  • Stress response genes
  • Cell-surface receptors
  • Regulators of apoptosis
  • Growth factors, ligands and their modulators
  • Early response genes
  • Transcription factors and Regulators
  • Viruses
  • Enzymes
  • Miscellaneous

  • (*indicates that the gene has a kB site in the promoter but has not clearly been shown to be controlled by NF-kB; or the gene expression is associated with increased NF-kB activity but has not been shown to be a target directly)

    Cytokines/Chemokines and their modulators

    Gene

    Function

    Reference

    Acc #

    Human Gene Name

    BAFF

    B-cell Activating Factor

    Moon & Park , 2007

    NM_006573

    TNFSF13B

    BLIMP-1

    B lymphocyte-induced maturation protein-1

    Calame, 2008

    NM_00198

    BLIMP1 /PRDM1

    CCL5

    T-cell secreted factor

    Wickremasinghe et al, 2004 

    NM_002985

    CCL5

    CCL15/Leukotactin/ SCYA15

    Chemokine for cell attraction

    Shin et al, 2005 

    NM_032965

    CCL15

    CCL17

    Chemokine

    Takegawa et al, 2008 

    NM_002987

    CCL17

    CCL19

    Recruitment of naive T cells to dendritic cells

    Pietila et al, 2007 

    NM_006274

    CCL19

    CCL20

    Ligand of CC chemokine receptor 6

    Lee et al, 2008; Battaglia et al, 2007

    NM_004591

    CCL20

    CCL22

    Epithelial cell chemokine at mucosa

    Nakayama et al, 2004 

    NM_002990

    CCL22

    CCL23/SYA23

    Monocyte chemokine

    Shin et al, 2007

    NM_005064

    CCL23

    CCL28

    Chemokine for T-cell attraction

    Ogawa et al, 2004 

    NM_148672

    CCL28

    CINC-1

    Cytokine-induced neutrophil chemoattractant

    Blackwell et al, 1994 Ohtsuka et al, 1996

    NM_001511

    CXCL1

    *CXCL 11

    Chemokine ligand for CXCR3

    Tensen et al, 1999

    NM_005409

    CXCL11

    Eotaxin

    beta Chemokine, eosinphil-specific

    Hein et al, 1997

    NM_001565. 

    CXCL10

    Fractalkine

    TNF-induced chemokine

    Ahn et al, 2004;Bhavsar et al, 2008

    NP_002987

    CXCL3

    Gro alpha

    Melanoma growth stimulating activity

    Anisowicz et al, 1991

    NM_001511

    CXCL1

    Gro beta

    Chemokine

    Anisowicz et al, 1991

    AAP13104

    GRO-beta

    Gro gamma

    Chemokine

    Anisowicz et al, 1991

    AAP13105. 

    GRO-gamma

    Gro-1

    Growth regulated oncogene; chemokine

    Wood, 1995

    NM_001511

    CXCL1

    *ICOS

    Inducible co-stimulator

    Haaning Anderson et al, 2003

    NM_012092

    ICOS

    IFN-g

    Interferon

    Sica et al, 1992; Sica et al, 1997

    NM_000619

    IFNG

    IL-1a

    Interleukin-1a

    Mori & Prager, 1996

    NM_000575

    IL1A

    IL-1b

    Interleukin-1b

    Hiscott et al, 1993

    NM_000576

    IL1B

    IL-1 receptor antagonist

    Inhibitor of IL-1 activity

    Smith et al, 1994

    NM_173842

    IL1RN

    IL-2

    Interleukin-2

    Serfling et al, 1989; Hoyos et al, 1989; Lai et al, 1995

    NM_000586

    IL2

    IL-6

    Interleukin-6, inflammatory cytokine

    Libermann & Baltimore, 1990; Shimizu et al, 1990;Son et al, 2008

    NM_000600

    IL6

    IL-8

    Interleukin-8, alpha-chemokine

    Kunsch & Rosen, 1993; Kang et al., 2007

    NM_000584

    IL8

    IL-9

    Interleukin-9

    Zhu et al, 1996; Chen et al, 2008

    NM_000590

    IL9

    IL-10

    Interleukin-10

    Xu & Shu, 2002; Cao et al, 2006

    NM_000572

    IL10

    IL-11

    Interleukin-11

    Bitko et al, 1997

    NM_000641

    IL11

    IL-12B (p40)

    Interleukin-12

    Murphy et al, 1995

    NM_002187

    IL12B

    IL-12A (p35)

    Interleukin-12

    Homma et al, 2007

    NM_000882

    IL12A

    IL-13

    Interleukin-13

    Hinz et al, 2002

    NM_002188

    IL13

    *IL-15

    Interleukin-15

    Azimi et al, 1998

    NM_172174

    IL15

    IL-17

    Interleukin-17

    Shen et al, 2006

    NM_002190

    IL17

    IL-23A (p19)

    Interleukin-23 (p19 gene)

    Carmody et al, 2006; Liu et al, 2007

    NM_016584

    IL23A

    IL-27 (p28)

    Interleukin-27 (p28 subunit)

    Liu et al, 2007

    NM_145659

    IL27

    EBI3/IL-27B

    EBV-induced gene 3 (IL-27beta chain)

    Poleganov et al, 2008

    NM_005755

    EBI3

    beta-Interferon

    Interferon

    Hiscott et al, 1989;

     NM_002176

    IFNB1

    Lenardo et al, 1989

    IP-10

    alpha Chemokine

    Ohmori & Hamilton, 1993; Yang et al, 2007

    NM_002994

    CXCL5

    KC

    alpha Chemokine

    Ohmori et al, 1995

    S79767

    KC

    IiGp1

    Cytokine

    Bunting et al, 2007

    NM_021792

    Iigp1

     

     

     

    NM_002994

    CXCL5

    *LIX (mouse); ENA-78 (CXCL5) and GCP-2 (CXCL6) (human)

    LPS-induced CXC chemokines

    Smith et al, 2002

    NM_002993

    CXCL6

    Lymphotoxin a

    TNF-like cytokine

    Worm et al, 1998

    NM_000595

    LTA

    Lymphotoxin b

    Anchors TNF to cell surface

    Kuprash et al, 1996

    NM_002341

    LTB

    MCP-1/JE

    Macrophage chemotactic protein, beta Chemokine

    Ueda et al, 1994; 1997

    NM_002982

    CCL2

     

     

    Teferedegne et al, 2006; Xing & Remnick, 2007; Ishikado et al, 2009

     

    MIG

    Monokine induced by IFN-gamma

    Bunting et al, 2007

    NM_002416

    CXCL9

    MIP-1a,b

    Macrophage inflammatory protein-1, b Chemokine

    Grove & Plumb, 1993; Widmer et al, 1993

    NM_002983

    CCL3

     

     

    NM_002984

    CCL4

    aka (LAG-1)

    Lymphocyte activation gene-1

    Xu et al, 2002; Modi et al, 2001

    NM_002984

    CCL4

    MIP-2

    Macrophage inflammatory protein-2, b Chemokine

    Widmer et al, 1993; Lee et al, 2005

     NM_002090

    CXCL3

    MIP-3alpha/CCL20

    Macrophage inflammatory protein-3a

    Kwon et al, 2002; Tomimori et al, 2007

    NM_004591

    CCL20

    *mob-1

    A C-X-C chemokine

    Varley et al, 2003

    NM_001565

    CXCL10

    Neutrophil activating peptide-78

    Activates neutrophils

    Keates et al., 2001

    NM_002994

    CXCL5

    RANTES

    Regulated upon Activation Normal T lymphocyte Expressed and Secreted,b Chemokine

    Moriuchi et al, 1997

    NM_002985

    CCL5

    TCA3, T-cell activation gene 3

    T-cell activation gene 3, beta chemokine

    Oh & Metcalfe, 1994

    NM_002981

    CCL1

    TNFalpha

    Tumor necrosis factor alpha

    Shakhov et al, 1990; Collart et al, 1990

    NM_000594

    TNF

    TNFbeta

    Tumor necrosis factor beta

    Paul et al, 1990; Messer et al, 1990

    NM_000595

    LTA

    TRAIL (aka Apo2 ligand)

    Cytokine

    Baetu et al, 2001; Matsuda et al, 2005

    NM_003810

    TNFSF10

    TFF3 (Treefoil factor)

    Peptide in response to gut irritation

    Baus-Loncar et al, 2004

    NM_003226

    TFF3

    VEGI

    Vascular endothelial growth inhibitor

    Xiao et al, 2005

    NM_005118

    TNFSF15

     

    Immunoreceptors

    Gene

    Function

    Reference

     Access #

     Human Gene Name

    B7.1 (CD80)

    Co-stimulation of T cells via CD28 binding

    Fong et al, 1996; Zhao et al, 1996

    NM_005191

    CD80

    BRL-1

    B-cell homing receptor

    Wolf et al, 1998

    NM_001716

    BLR1

    CCR5

    Chemokine receptor

    Liu et al, 1998

    NM_000579

    CCR5

    CCR7

    Chemokine receptor

    Hopken et al, 2002

    NM_001838

    CCR7

    CXCR

    Chemokine receptor

    Maxwell et al, 2007

    NM_000634

    IL8RA

    CXCR2

    Chemokine receptor

    Maxwell et al, 2007

    NM_001557

    IL8RB

    CD137

    TNF-like receptor

    Kim et al, 2003

    NM_001561

    TNFRSF9

    CD154

    CD40 ligand

    Srahna et al, 2001; Schubert et al, 2002; Pham et al, 2005

    NM_000074

    CD40LG

    CD3gamma

    T-cell marker

    Willard-Gallo et al, 2005

    NM_000073

    CD3G

    CD21

    B-cell surface molecule

    Debnath et al, 2007

    NM_001006658

    CR2

    CD38

    NAD to cADP ribose converting molecule

    Kang et al, 2006; Tirumurugaan et al, 2008

    NM_001775

    CD38

    CD40

    TNF-receptor family member

    Hinz et al, 2001

    NM_001250

    CD40

    CD48

    Antigen of stimulated lymphocytes

    Klaman & Thorley-Lawson, 1995

    NM_001778

    CD48

    CD83

    T-cell development molecule

    McKinsey et al, 2000; Berchtold et al, 2002

    NM_004233

    CD83

    CD86

    Dendritic cell development molecule

    Zou & Hu, 2005

    NM_175862

    CD86

    CD98

    Membrane receptor, survival blood cells

    Yan et al, 2006

    NM_001012661

    SLC3A2

    CD134

    TNF-like receptor

    Tone et al, 2007

    NM_003327

    TNFRSF4

    *F11-receptor

    Ig-like receptor for platelet adhesion

    Sobocki et al, 2005

    NM_016946

    F11R

    FcRn

    Neonatal receptor for IgG

    Liu et al, 2007

    NM_004107

    FCGRT

    Fc epsilon receptor II (CD23)

    Receptor for IgE

    Richards & Katz, 1997; Lu et al, 2006; Debnath et al, 2007

    NM_002002

    FCER2

    HLA-G

    Human leukocyte antigen-G

    Langat et al., 2007

     NM_002127

    HLA-G

    *ICOS

    T-cell activation factor

    Shilling et al., 2005

    NM_012092

    ICOS

    IL-2 receptor a-chain

    IL-2 receptor subunit

    Ballard et al., 1988

    NM_000417

    IL2RA

    Immunoglobulin Cgamma1

    IgG heavy chain

    Lin & Stavnezer, 1996

    J00230

    IGHG2

    Immunoglobulin gamma1

    IgG heavy chain

    Dryer & Covey, 2005

     J00228

    IGHG1

    Immunoglobulin gamma4

    IgG heavy chain

    Agresti & Vercelli, 2002

     K01316

    IGHG4

    Immunoglobulin e heavy chain

    IgE heavy chain

    Iciek et al, 1997

     J00222

    IGHE

    Immunoglobulin k light chain

    Antibody light chain

    Sen & Baltimore, 1986

     J00241

    IGKC

    Invariant Chain II

    Antigen presentation

    Pessara & Koch, 1990

     

     

    Kinin B1 Receptor

    Cardiovascular homeostasis; inflammation

    Merino et al, 2005

    NM_000710

    BDKRB1

    MHC class I (H-2Kb)

    Major histocompatibility antigen

    Israël et al, 1989; Israël et al, 1989

     

     

    MHC Class I HLA-B7

    Major histocompatibility antigen

    Johnson & Pober, 1994

    NM_005514

    HLA-B

    b2 Microglobulin

    Chaperone for MHC class I-like molecules

    Israël et al, 1989; Israël et al, 1989; Gobin et al, 2002

    NM_004048

    B2M

    Nod2

    Intracellular pathogen recognition

    Gutierrez et al, 2002

    NM_022162

    NOD2

    Polymeric Ig receptor

    Binds Ig

    Schjerven et al, 2001

     AJ276452

    pIgR

    PGRP-S

    Peptidoglycan recognition protein-S

    Lang et al, 2007

    NM_005091

    PGLYRP1

    T-cell receptor b chain

    T-cell receptor subunit

    Jamieson et al, 1989; McMillan & SIkes, 2008

    NG_001333

    TCRB

    T-cell receptor/CD3gamma

    T-cell receptor subunit

    Badran et al, 2002

    NM_000073

    CD3G

    TLR-2

    Toll-like receptor

    Wang et al, 2001; Johnson & Tapping, 2007

    NM_003264

    TLR2

    TLR9

    Toll-like receptor

    Takeshita et al, 2004

    NM_017442

    TLR9

    *TNF-Receptor, p75/80 (CD120B)

    High-affinity TNF receptor

    Santee & Owen-Schaub, 1996

    NM_001066

    TNFRSF1B

    TREM-1

    Neutrophil/monocyte Ig receptor

    Zeng et al, 2007

    NM_018643

    TREM1

     

    Proteins involved in antigen presentation

    Gene

    Function

    Reference

     Acc #

     Human Gene Name

    Complement B

    Activator of alternative complement pathway

    Huang et al, 2002

    NM_001710

    CFB

    Complement component 3

    Component of complement pathway

    Moon et al, 1999

     NM_000064

    C3

    Complement Receptor 2

    Complement receptor for B-cell response to Ag

    Tolnay et al, 2002

     NM_001006658

    CR2

    Proteasome Subunit LMP2

    Subunit of 26S proteasome,cysteine protease

    Wright et al, 1995; Marques et al, 2004

    NM_002800

    PSMB9

    Peptide Transporter TAP1

    Peptide transporter for ER

    Wright et al, 1995; Marques et al, 2004

     NM_000593

    TAP1

    Tapasin

    MHC class I presentation and assembly

    Herrmann et al, 2003

    NM_003190

    TAPBP

     

    Cell adhesion molecules

    Gene

    Function

    Reference

     Acc #

     Human Gene Name

    CD44

    Cell-surface receptor for hyaluronic acid

    Hinz et al, 2002

    NP_000601

    CD44

    DC-SIGN

    Dendritic cell surface C-type lectin

    Liu et al, 2003

    NM_021155

    CD209

    ELAM-1 (CD62E, E-selectin)

    E-selectin, endothelial cell leukocyte adhesion molecule

    Whelan et al, 1991; Schindler & Baichwal, 1994

    NM_000450

    SELE

    Endoglin

    Endothelial cell membrane glycoprotein

    Botella et al, 2002

    NM_000118

    ENG

    Fibronectin

    Extracellular attachment

    Lee et al, 2002; Norton et al, 2004

     NM_002026

    FN1

    ICAM-1

    Intercellular adhesion molecule-1

    van de Stolpe et al., 1994' Bunting et al, 2007

    NM_000201

    CD54

    MadCAM-1

    Mucosal addressin cell adhesion molecule

    Takeuchi & Baichwal, 1995

     NM_130760

    MADCAM1

    NCAM

    Neural cell adhesion molecule

    Simpson & Morris, 2000

    NM_000615

    NCAM

    P-selectin

    Platelet adhesion receptor

    Pan & McEver, 1995

     NM_003005

    SELP

    Tenascin-C

    ECM protein controls cell attachment and migration, cell growth

    Mettouchi et al, 1997

    NM_002160

    TNC

    VCAM-1

    Vascular cell adhesion molecule

    Iademarco et al, 1992

    NM_001078

    VCAM1

     

    Acute phase proteins

    Gene

    Function

    Reference

     Acc #

     Human Gene Name

    Angiotensinogen (Angiotensin II)

    Angiotensin precursor, regulates blood pressure

    Brasier et al, 1990; Ron et al, 1990

    NM_000029

    AGT

    beta-defensin-2

    Anti-microbial peptide

    Diamond et al, 2000; Tsutsumi-Ishii & Nagaoka, 2002; Kao et al, 2008

     AF040153

    DEFB2

    C4b binding protein

    Complement binding protein

    Moffat & Tack, 1992

    NM_000715

    C4BPA

    Complement factor B

    Complement factor

    Nonaka & Huang, 1990

    NM_001710

    CFB

    Complement factor C4

    Activates extrinsic pathway of complement activation

    Yu et al, 1989

     NM_007293

    C4A

    C-reactive protein

    Host defense protein

    Zhang et al, 1995; Agrawal et al, 2003

     NM_000567

    CRP

    Hepcidin

    Acute phase protein

    Liao et al, 2006

    NM_021175

    HAMP

    Lipopolysaccharide binding protein

    Binds to LPS receptor (CD14) with LPS

    Schumann, 1995

    NM_004139

    LBP

    Pentraxin PTX3

    Pentraxin

    Basile et al, 1997

    NM_002852

    PTX3

    Serum amyloid A proteins (SAA1, SAA2, SAA3)

    Serum components

    Edbrooke et al, 1991; Li & Liao, 1991; Thorn & Whiteside, 2002; Son et al, 2004

    NM_000331

    SAA1

    Serum amyloid A proteins (SAA1, SAA2, SAA3)

    Serum components

     

    NM_030754

    SAA2

    Serum amyloid A proteins (SAA1, SAA2, SAA3)

    Serum components

     

    S73444

    SAA3

    Tissue factor-1

    Activates extrinsic pathway of complement activation

    Mackman et al, 1991

    NM_001993

    F3

    Urokinase-type plasminogen activator

    Activates fibrinogen for fibrin clot lysis

    Novak et al, 1991

    NM_002658

    PLAU

     

    Stress response genes

    Gene

    Function

    Reference

     Acc #

     Human Gene Name

    *CYP2E1

    Cytochrome p450

    Abdel-Razak et al, 2004

     NM_000773

    CYP2E1

    CYP2C11

    Cytochrome p450

    Morgan et al, 2002

    X79081

    CYP2C11

    CYP7b

    Cytochrome p450

    Dulos et al, 2005

    NM_004820

    CYP7B1

    COX-2

    Cyclooxygenase, prostaglandin endoperoxide synthase

    Yamamoto et al, 1995;Ackerman et al, 2007; Kaltschmidt et al, 2002

     NM_000963

    PTGS2

    Ferritin H chain

    Iron storage protein

    Kwak et al, 1995

    NM_002032

    FTH1

    HSP90-alpha

    Heat shock protein

    Ammirante et al, 2007

    NM_001017963

    HSP90AA1

    *5-Lipoxygenase (guinea pig)

    Arachidonic acid metabolic enzyme, leukotriene synthesis

    Chopra et al, 1992

    XM_001127464

    ALOX5

    12-Lipoxygenase

    Arachidonic acid metabolic enzyme

    Arakawa et al, 1995

     NM_000697

    ALOX12

    Inducible NO-Synthase

    NO synthesis

    Geller et al, 1993

    NM_000625

    NOS2A

    *MAP4K1

    Activator of stress-induced protein kinase pathway

    Carter et al, 2002

    NM_001042600

    MAP4K1

     Cu/Zn SOD

    Superoxide dismutase

    Rojo et al, 2004

    NM_000454

    SOD1

    SOD1

    Manganese uperoxide dismutase

    Das et al, 1995

    NM_000454

    SOD1

    SOD2

    Manganese superoxide dismutase

    Xu et al, 1999; 2007

    NM_000636

    SOD2

    *Mx1

    Viral resistance gene

    Gerardin et al, 2004

    NM_002462

    MX1

    NAD(P)H quinone oxidoreductase (DT-diaphorase)

    Bioreductive enzyme

    Yao & O'Dwyer, 1995

    NM_000903

    NQO1

    Phospholipase A2

    Fatty acid metabolism

    Morri et al, 1994

    AF058921

    PLA2

    SEPS1

    Involved in cytokine production

    Gao et al, 2006

     NM_018445

    SELS

     

    Cell-surface receptors

    Gene

    Function

    Reference

     Acc #

     Human Gene Name

    ABCA1

    ATP-binding cassette transporter

    Gerbod-Giannone et al, 2006

    NM_005502

    ABCA1

    ABCC6

    ATP-binding, multidrug resistance-associated protein 6 transporter

    Jiang et al, 2005

    NM_001171

    ABCC6

    A1 adenosine receptor

    Pleiotropic physiological effects

    Nie et al, 1998; Jhaveri et al, 2007

    NM_000674

    ADORA1

    A2A

    Adenosine receptor

    Morello et al, 2006

     NM_000675

    ADORA2A

    *ADAM19

    Dendritic cell marker

    Ehrnsperger et al, 2005

     NM_023038

    ADAM19

    Amiloride-sensitive sodium channel

    Sodium channel

    Baines et al, 2002; Haddad, 2005

    NM_001038

    SCNN1A

    *alpha2B-adrenergic receptor

    adrenergic receptor

    Cayla et al, 2004

    NM_000682

    ADRA2B

    Bradykinin B1-Receptor

    Pleiotropic physiological effects

    Ni et al, 1998

    NM_000710

    BDKRB1

    *CD23

    Cell-surface molecule

    Tinnell et al, 1998

     NM_002002

    FCER2/CD23

    CD69

    Lectin mainly on activated T cells

    Lopez-Cabrera et al, 1995

    NM_001781

    C69

    DOR

    Delta opiod receptor

    Chen et al, 2005, 2006

     NM_000911

    OPRD1

    Epidermal Growth Factor Receptor

    Receptor for EGF

    Nishi et al, 2003; Thornburg & Raab-Traub, 2007

    NM_005228

    EGFR

    ErbB2

    EGF-like receptor

    Kitamura et al, 2005

    NM_001005862

    ERBB2

    Gal1 Receptor

    Galanin receptor, neuroendocrine peptide

    Lorimer et al, 1997

     NM_002256

    KISS1

    Lox-1

    Receptor for Oxidized low density lipoprotein

    Nagase et al, 1998

    NM_002543

    OLR1

    Ly49

    Receptor on NK cells

    Pascal et al, 2007

     NM_006611

    KLRA1

    Mdr1

    Multiple drug resistance mediator (P-glycoprotein)

    Zhou & Kuo, 1997; Wang et al, 2007

    NM_018849

    ABCB4

    Mu-opioid receptor

    Opioid Receptor

    Kraus et al, 2003

    EU360599

    OPRM1

    mGlu2

    Metabotropic glutamate receptor 2

    Chiechio et al, 2006

    NM_000839

    GRM2

    Neuropeptide Y-Y1 receptor

    Pleiotropic physiological effects

    Musso et al, 1997

    NM_000909

    NPY1R

    *NMDA receptor subunit 2A (rat)

    Neural receptor for N-methyl-D-aspartate

    Richter et al, 2002

    NM_000833

    GRIN2A

    *NMDA receptor subunit NR-1 (GRIN1 gene)

    Subunit of neural receptor for N-methyl-D-aspartate

    Begni et al, 2003

    NM_021569

    GRIN1

    Oxytocin receptor

    Oxytocin receptor

    Terizidou et al, 2006

    NM_000916

    OXTR

    PAF receptor 1

    Platelet activator receptor

    Mutoh et al, 1994

    NM_000952

    PTAFR

    P-gp

    P-glycoprotein-Drug resistance

    Wang et al, 2007

    NM_000927

    ABCB1

    RAGE- receptor for advanced glycation end products

    Receptor for Advanced Glycation End products

    Li & Schmidt, 1997

    NM_001136

    AGER

     

    Regulators of apoptosis

    Gene

    Function

    Reference

     Acc #

     Human Gene Name

    ASC

    Apoptosis-associated speck-like protein containing a CARD

    Sun et al, 2007

    NM_013258

    PYCARD

    Bax

    Pro-apoptotic Bcl-2 homologue

    Grimm et al, 2004

    NM_004324

    BAX

    Bfl1/A1

    Pro-survival Bcl-2 homologue

    Grumont et al, 1999; Zong et al, 1999

     NM_004049

    BCL2A1

    Bcl-xL

    Pro-survival Bcl-2 homologue

    Chen et al, 1999; Lee et al, 1999

    NM_138578

    BCL2L1

    Bcl-2

    Pro-survival factor

    Catz & Johnson, 2001

    NM_000633

    BCL2

    Bim

    Pro-apoptotic Bcl-2 homolog

    Wang et al, 2008

    NM_138621

    BCL2L11

    B7-H1

    Programmed cell death ligand 1

    Lee et al, 2005

    NM_014143

    CD274

    BNIP3

    Hypoxia-inducible death factor

    Baetz et al, 2005; Shaw et al, 2006

     NM_004052

    BNIP3

    Caspase-11

    Caspase

    Schauvliege et al, 2002

    NM_001225

    CASP4

    Nr13

    Pro-survival Bcl-2 homologue

    Lee et al, 1999

     

     

    c-FLIP

    Pro-survival factor

    Kreuz et al, 2001

    NM_003879

    CFLAR

    CD95 (Fas)

    Pro-apoptotic receptor

    Chan et al, 1999; Zhou et al, 2005; Singh et al, 2006

    NM_000043

    FAS

    CIDEA

    Cell death-inducing DFFA-like effector A

    Pettersson et al, 2008

    NP_001270.1; NP_938031.1

    CIDEA

    *Fas-associated phosphatase-1

    Protein phosphatase

    Irie et al, 2001

     NM_006264

    PTPN13

    Fas-Ligand

    Inducer of apoptosis

    Matsui et al, 1998; Singh et al, 2006

    NM_000639

    FASLG

    IAPs

    Inhibitors of Apoptosis

    You et al, 1997; Stehlik et al, 1998a, 1998b

     

     

    IEX-1L

    Immediate early gene

    Wu et al, 1998

     NM_052815

    IER3

    TRAF-1

    TNF-receptor associated factor

    Schwenzer et al, 1999

     NM_005658

    TRAF1

    TRAF-2

    TNF-receptor associated factor

    Wang et al, 1998

    NM_021138

    TRAF2

    *TRAF-2 binding protein (Carp)

    TRAF2 binding protein

    Chang et al, 2005

    NM_052864

    TIFA

    XIAP

    X-linked inhibitor of apoptosis

    Turner et al, 2007

    NM_001167

    XIAP

     

    Growth factors, ligands, and their modulators

    Gene

    Function

    Reference

     Acc #

     Human Gene Name

    Activin A

    TGF-beta-like factor

    Alexander et al, 2007

    NM_002192

    INHBA

    Angiopoietin

    Tie-2 receptor ligand

    Scott et al, 2005

     NM_001146

    ANGPT1

    BCAP

    B-cell Adaptor for Phosphoinositide 3-kinase

    Gupta et al, 2008

    NM_152309

    PI3KAP1

    BDNF

    Brain-derived neurotrophic factor

    Saha et al, 2007

    NM_001709

    BDNF

    BLyS

    B-lymphocyte stimulator

    Fu et al, 2006

    NM_006573

    TNFSF13B

    BLNK

    B-cell linker

    Gupta et al, 2008

    NM_013314

    BLNK

    BMP-2

    Bone Morphogenic Protein-2

    Feng et al, 2003; Fukui et al, 2006

     NM_001200

    BMP2

    BMP-4

    Bone Morphogenic Protein-4

     Zhu et al, 2007

    NM_001202

    BMP4

    CGRP

    Calcitonin gene-related peptide

    Bowen et al, 2005

    NM_000728

    CALCB

    FGF8

    Fibroblast Growth Factor 8

    Armstrong et al, 2006

    NM_006119

    FGF8

    FLRG

    Follistatin-related gene

    Bartholin et al, 2007

    NM_005860

    FSTL3

    G-CSF

    Granulocyte Colony Stimulating Factor

    Nishizawa & Nagata, 1990

    NM_000759

    CSF3

    GM-CSF

    Granulocyte Macrophage Colony Stimulating Factor

    Schreck & Baeuerle, 1990; Bunting et al, 2007

     NM_000758

    CSF2

    *HGF/SF

    Hepatocyte growth factor/scatter factor

    Harrison & Farzaneh, 2000

    NM_000601

    HGF

    EPO

    Erythropoietin

    Figueroa et al, 2002

    NM_000799

    EPO

    *IGFBP-1

    Insulin-like growth factor binding protein-1

    Lang et al, 1999

    NM_001013029

    IGFBP1

    IGFBP-2

    Insulin-like growth factor binding protein-2

    Cazals et al, 1999<